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    fndc3bb fibronectin type III domain containing 3Bb [ Danio rerio (zebrafish) ]

    Gene ID: 568274, updated on 27-Mar-2024

    Summary

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    Official Symbol
    fndc3bbprovided by ZNC
    Official Full Name
    fibronectin type III domain containing 3Bbprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-070510-2
    See related
    Ensembl:ENSDARG00000062023 AllianceGenome:ZFIN:ZDB-GENE-070510-2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human FNDC3B (fibronectin type III domain containing 3B). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    Location:
    chromosome: 24
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (26750211..26885873, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (26611749..26744166, complement)

    Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene phospholipase D1b Neighboring gene growth hormone secretagogue receptor b Neighboring gene neutral cholesterol ester hydrolase 1-like Neighboring gene neutral cholesterol ester hydrolase 1b, tandem duplicate 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Evolutionary evidence of tumor necrosis factor super family members in the Japanese pufferfish (Takifugu rubripes): Comprehensive genomic identification and expression analysis. Biswas G, et al. Mar Genomics, 2015 Aug. PMID 25792259
    2. Contrasted innate responses to two viruses in zebrafish: insights into the ancestral repertoire of vertebrate IFN-stimulated genes. Briolat V, et al. J Immunol, 2014 May 1. PMID 24683187
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    fibronectin type III domain containing 3Bb; fibronectin type III domain-containing protein 3B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007135.7 Reference GRCz11 Primary Assembly

      Range
      26750211..26885873 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002666672.5 → XP_002666718.1  fibronectin type III domain-containing protein 3B

      UniProtKB/TrEMBL
      A0A8M1RRY6
      Related
      ENSDARP00000114171.1, ENSDART00000147788.2
      Conserved Domains (1) summary
      cd00063
      Location:370 → 461
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    Nucleotide Protein
    Heading Accession and Version

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